Hello James:
This link provides an interesting discussion of the Balikpapan operation, including the broader planning and command framework:
http://www.ijnhonline.org/2016/05/26...s-borneo-1945/
There is also some discussion of the air component of theBalikpapan operation (focusing on the RAAF) in Mark Johnston's 'Whispering Death'. If you don't have access to this book I could send you scans. Contact me via PM if you want to do this.
Hope that helps.
Cheers
Don W